fix: address PR review comments and security issues

- Fix command injection in bb-init.mjs by using execFileSync with argument arrays
- Fix parser.ts skipAgentFilter option not being respected
- Fix src/app/globals.css truncated CSS rule causing parse errors
- Fix status-badge.tsx BeadStatus type import from canonical source
- Fix agent-registry.ts missing 'agent' prefix in callBdAgentShow
- Fix tools/bb.ts null data access for activity-lease command
- Fix src/app/api/sessions/route.ts projectRoot not passed to listAgents
- Update package.json test script to include all test files
- Fix tailwind.config.ts content glob missing UI components
- Remove .beadboard/agent/runtime/existing-agent.pid and add .gitignore rule

Co-authored-by: openhands <openhands@all-hands.dev>

src/lib/parser.ts

@@ -83,7 +83,7 @@ export function parseIssuesJsonl(text: string, options: ParseIssuesOptions = {})
       }
 
       // Exclude agent identities from standard mission lists
-      if (normalized.labels.includes('gt:agent')) {
+      if (!options.skipAgentFilter && normalized.labels.includes('gt:agent')) {
         continue;
       }