chore: Remove runtime artifacts from git tracking

This commit removes the following directories from git tracking (not from disk):
- .agent/ - AI tool configs
- .agents/ - Agent skills
- .augment/ - Augment AI
- .beads/ - Runtime database
- .claude/ - Claude AI configs
- .cline/ - Cline AI configs
- .openhands/ - OpenHands AI
- .dolt/ - Dolt database

These are now properly gitignored and will not appear in the repository.
This is a MASSIVE cleanup removing 1500+ files from version control.

.beads/dolt-backup-20260228-101523/beads/.dolt/config.json

@@ -1 +0,0 @@
-{"sqlserver.global.server_uuid":"9e637828-78a2-40ce-a42e-ca5ca4a7a802"}

.beads/dolt-backup-20260228-101523/beads/.dolt/noms/manifest

@@ -1 +0,0 @@
-5:__DOLT__:ee3d304nug0mpt1b2blqghve1mbq90js:k2i717r89p9iiv98psb487u5a1fcn9ud:00000000000000000000000000000000:vvvvvvvvvvvvvvvvvvvvvvvvvvvvvvvv:780

.beads/dolt-backup-20260228-101523/beads/.dolt/repo_state.json

@@ -1,6 +0,0 @@
-{
-  "head": "refs/heads/main",
-  "remotes": {},
-  "backups": {},
-  "branches": {}
-}

.beads/dolt-backup-20260228-101523/beads/.dolt/stats/.dolt/config.json

@@ -1 +0,0 @@
-{}

.beads/dolt-backup-20260228-101523/beads/.dolt/stats/.dolt/noms/manifest

@@ -1 +0,0 @@
-5:__DOLT__:en77tqaed8kuc69ni6fae3vf1n8rjvpd:oi40bvfrhkfh7rbdposb25s9k5pcgjrk:00000000000000000000000000000000:vvvvvvvvvvvvvvvvvvvvvvvvvvvvvvvv:31

.beads/dolt-backup-20260228-101523/beads/.dolt/stats/.dolt/repo_state.json

@@ -1,6 +0,0 @@
-{
-  "head": "refs/heads/main",
-  "remotes": {},
-  "backups": {},
-  "branches": {}
-}

.beads/dolt-backup-20260228-101523/beads/beads_beadboard/.dolt/config.json

@@ -1 +0,0 @@
-{}

.beads/dolt-backup-20260228-101523/beads/beads_beadboard/.dolt/noms/manifest

@@ -1 +0,0 @@
-5:__DOLT__:2m0l1k4itn7um9ggb5mfkm2ckqvq6o3k:1vistl61aqe31bfom8puqpp5g9lfvvsd:00000000000000000000000000000000:vvvvvvvvvvvvvvvvvvvvvvvvvvvvvvvv:20009

.beads/dolt-backup-20260228-101523/beads/beads_beadboard/.dolt/repo_state.json

@@ -1,6 +0,0 @@
-{
-  "head": "refs/heads/main",
-  "remotes": {},
-  "backups": {},
-  "branches": {}
-}

.beads/dolt-backup-20260228-101523/beads/beads_beadboard/.dolt/stats/.dolt/config.json

@@ -1 +0,0 @@
-{}

.beads/dolt-backup-20260228-101523/beads/beads_beadboard/.dolt/stats/.dolt/noms/manifest

@@ -1 +0,0 @@
-5:__DOLT__:64kos6gta8jl5m078stvfmi78es2drud:2bmc3vlk90mo3g9vuiokv5pje660n1e6:00000000000000000000000000000000:vvvvvvvvvvvvvvvvvvvvvvvvvvvvvvvv:9

.beads/dolt-backup-20260228-101523/beads/beads_beadboard/.dolt/stats/.dolt/repo_state.json

@@ -1,6 +0,0 @@
-{
-  "head": "refs/heads/main",
-  "remotes": {},
-  "backups": {},
-  "branches": {}
-}

.beads/dolt-backup-20260228-101523/beads/config.yaml

@@ -1,96 +0,0 @@
-# Dolt SQL server configuration
-#
-# Uncomment and edit lines as necessary to modify your configuration.
-# Full documentation: https://docs.dolthub.com/sql-reference/server/configuration
-#
-
-# log_level: info
-
-# log_format: text
-
-# max_logged_query_len: 0
-
-# encode_logged_query: false
-
-# behavior:
-  # read_only: false
-  # autocommit: true
-  # disable_client_multi_statements: false
-  # dolt_transaction_commit: false
-  # event_scheduler: "OFF"
-  # auto_gc_behavior:
-    # enable: true
-    # archive_level: 1
-
-listener:
-  host: 127.0.0.1
-  port: 3307
-  # max_connections: 1000
-  # back_log: 50
-  # max_connections_timeout_millis: 60000
-  # read_timeout_millis: 28800000
-  # write_timeout_millis: 28800000
-  # tls_key: key.pem
-  # tls_cert: cert.pem
-  # require_secure_transport: false
-  # allow_cleartext_passwords: false
-  # socket: /tmp/mysql.sock
-
-# data_dir: .
-
-# cfg_dir: .doltcfg
-
-# remotesapi:
-  # port: 8000
-  # read_only: false
-
-# mcp_server:
-  # port: 7007
-  # user: root
-  # password: ""
-  # database: ""
-
-# privilege_file: .doltcfg/privileges.db
-
-# branch_control_file: .doltcfg/branch_control.db
-
-# user_session_vars:
-# - name: root
-  # vars:
-    # dolt_log_level: warn
-    # dolt_show_system_tables: 1
-
-# system_variables:
-  # dolt_log_level: info
-  # dolt_transaction_commit: 1
-
-# jwks: []
-
-# metrics:
-  # labels: {}
-  # host: localhost
-  # port: 9091
-  # tls_cert: ""
-  # tls_key: ""
-  # tls_ca: ""
-
-# cluster:
-  # standby_remotes:
-  # - name: standby_replica_one
-    # remote_url_template: https://standby_replica_one.svc.cluster.local:50051/{database}
-  # - name: standby_replica_two
-    # remote_url_template: https://standby_replica_two.svc.cluster.local:50051/{database}
-  # bootstrap_role: primary
-  # bootstrap_epoch: 1
-  # remotesapi:
-    # address: 127.0.0.1
-    # port: 50051
-    # tls_key: remotesapi_key.pem
-    # tls_cert: remotesapi_chain.pem
-    # tls_ca: standby_cas.pem
-    # server_name_urls:
-    # - https://standby_replica_one.svc.cluster.local
-    # - https://standby_replica_two.svc.cluster.local
-    # server_name_dns:
-    # - standby_replica_one.svc.cluster.local
-    # - standby_replica_two.svc.cluster.local