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Viktor Barzin 7cb44d7264 [registry] Stop recurring orphan OCI-index incidents — detection + prevention + recovery
Second identical registry incident on 2026-04-19 (first 2026-04-13): the
infra-ci:latest image index resolved to child manifests whose blobs had been
garbage-collected out from under the index. Pipelines P366→P376 all exited
126 "image can't be pulled". Hot fix (a05d63e / 6371e75 / c113be4) restored
green CI but left the underlying bug unaddressed.

Root cause: cleanup-tags.sh rmtrees tag dirs on the registry VM daily at
02:00, registry:2's GC (Sunday 03:25) walks OCI index children imperfectly
(distribution/distribution#3324 class). Nothing verified pushes end-to-end;
nothing probed the registry for fetchability; nothing caught orphan indexes.

Phase 1 — Detection:
 - .woodpecker/build-ci-image.yml: after build-and-push, a verify-integrity
   step walks the just-pushed manifest (index + children + config + every
   layer blob) via HEAD and fails the pipeline on any non-200. Catches
   broken pushes at the source.
 - stacks/monitoring: new registry-integrity-probe CronJob (every 15m) and
   three alerts — RegistryManifestIntegrityFailure,
   RegistryIntegrityProbeStale, RegistryCatalogInaccessible — closing the
   "registry serves 404 for a tag that exists" gap that masked the incident
   for 2+ hours.
 - docs/post-mortems/2026-04-19-registry-orphan-index.md: root cause,
   timeline, monitoring gaps, permanent fix.

Phase 2 — Prevention:
 - modules/docker-registry/docker-compose.yml: pin registry:2 → registry:2.8.3
   across all six registry services. Removes the floating-tag footgun.
 - modules/docker-registry/fix-broken-blobs.sh: new scan walks every
   _manifests/revisions/sha256/<digest> that is an image index and logs a
   loud WARNING when a referenced child blob is missing. Does NOT auto-
   delete — deleting a published image is a conscious decision. Layer-link
   scan preserved.

Phase 3 — Recovery:
 - build-ci-image.yml: accept `manual` event so Woodpecker API/UI rebuilds
   don't need a cosmetic Dockerfile edit (matches convention from
   pve-nfs-exports-sync.yml).
 - docs/runbooks/registry-rebuild-image.md: exact command sequence for
   diagnosing + rebuilding after an orphan-index incident, plus a fallback
   for building directly on the registry VM if Woodpecker itself is down.
 - docs/runbooks/registry-vm.md + .claude/reference/service-catalog.md:
   cross-references to the new runbook.

Out of scope (verified healthy or intentionally deferred):
 - Pull-through DockerHub/GHCR mirrors (74.5% hit rate, no 404s).
 - Registry HA/replication (single-VM SPOF is a known architectural
   choice; Synology offsite covers RPO < 1 day).
 - Diun exclude for registry:2 — not applicable; Diun only watches
   k8s (DIUN_PROVIDERS_KUBERNETES=true), not the VM's docker-compose.

Verified locally:
 - fix-broken-blobs.sh --dry-run on a synthetic registry directory correctly
   flags both orphan layer links and orphan OCI-index children.
 - terraform fmt + validate on stacks/monitoring: success (only unrelated
   deprecation warnings).
 - python3 yaml.safe_load on .woodpecker/build-ci-image.yml and
   modules/docker-registry/docker-compose.yml: both parse clean.

Closes: code-4b8

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>
2026-04-19 17:08:28 +00:00
.beads bd init: initialize beads issue tracking 2026-04-06 15:38:46 +03:00
.claude [registry] Stop recurring orphan OCI-index incidents — detection + prevention + recovery 2026-04-19 17:08:28 +00:00
.git-crypt Add 1 git-crypt collaborator [ci skip] 2025-10-24 18:00:00 +00:00
.github chore: sort outage report service list alphabetically 2026-04-15 18:01:54 +00:00
.planning [ci skip] add auto-generated tiers.tf, planning docs, and helm chart cache 2026-03-06 23:55:57 +00:00
.woodpecker [registry] Stop recurring orphan OCI-index incidents — detection + prevention + recovery 2026-04-19 17:08:28 +00:00
ci [ci] Rebuild infra-ci image — registry index referenced missing blobs 2026-04-19 16:29:20 +00:00
cli add IPv6 connectivity via Hurricane Electric 6in4 tunnel 2026-03-23 02:22:00 +02:00
diagram [docs] TrueNAS decommission cleanup — remove references from active docs 2026-04-19 16:55:43 +00:00
docs [registry] Stop recurring orphan OCI-index incidents — detection + prevention + recovery 2026-04-19 17:08:28 +00:00
modules [registry] Stop recurring orphan OCI-index incidents — detection + prevention + recovery 2026-04-19 17:08:28 +00:00
playbooks [ci skip] Reduce node config drift: GPU label, OIDC idempotency, node-exporter, rebuild docs 2026-02-22 22:59:38 +00:00
scripts [cluster-health] Expand to 42 checks, remove pod CronJob path 2026-04-19 15:13:03 +00:00
secrets Woodpecker CI Update TLS Certificates Commit 2026-04-19 00:02:53 +00:00
stacks [registry] Stop recurring orphan OCI-index incidents — detection + prevention + recovery 2026-04-19 17:08:28 +00:00
state/stacks [ci,vault] Fix Tier-1 apply silently failing in Woodpecker 2026-04-19 14:25:52 +00:00
.gitattributes Add broker-sync Terraform stack (#7) 2026-04-17 21:17:45 +01:00
.gitignore .gitignore: ignore terragrunt_rendered.json debug output 2026-04-18 13:18:05 +00:00
.sops.yaml state: per-stack Transit keys for namespace-owner access control 2026-03-17 23:08:18 +00:00
AGENTS.md [docs] TrueNAS decommission cleanup — remove references from active docs 2026-04-19 16:55:43 +00:00
config.tfvars [infra] TrueNAS decommission — remove active references from Terraform + configs 2026-04-19 16:57:05 +00:00
CONTRIBUTING.md multi-user access: fix template memory default, add storage quota, add CONTRIBUTING.md [ci skip] 2026-03-19 23:49:15 +00:00
LICENSE.txt Drone CI Update TLS Certificates Commit 2025-10-12 00:13:18 +00:00
MEMORY.md Update MEMORY.md timestamp 2026-03-07 16:43:15 +00:00
README.md add architecture documentation for all infrastructure subsystems [ci skip] 2026-03-24 00:55:25 +02:00
terragrunt.hcl [infra] Adopt Authentik catch-all Proxy Provider + Application into TF (Wave 6a) 2026-04-18 22:48:26 +00:00
tiers.tf [ci skip] Phase 1: PostgreSQL migrated to CNPG on local disk 2026-02-28 19:08:06 +00:00

This repo contains my infra-as-code sources.

My infrastructure is built using Terraform, Kubernetes and CI/CD is done using Woodpecker CI.

Read more by visiting my website: https://viktorbarzin.me

Documentation

Full architecture documentation is available in docs/ — covering networking, storage, security, monitoring, secrets, CI/CD, databases, and more.

Adding a New User (Admin)

Adding a new namespace-owner to the cluster requires three steps — no code changes needed.

1. Authentik Group Assignment

In the Authentik admin UI, add the user to:

  • kubernetes-namespace-owners group (grants OIDC group claim for K8s RBAC)
  • Headscale Users group (if they need VPN access)

2. Vault KV Entry

Add a JSON entry to secret/platformk8s_users key in Vault:

"username": {
  "role": "namespace-owner",
  "email": "user@example.com",
  "namespaces": ["username"],
  "domains": ["myapp"],
  "quota": {
    "cpu_requests": "2",
    "memory_requests": "4Gi",
    "memory_limits": "8Gi",
    "pods": "20"
  }
}
  • username key must match the user's Forgejo username (for Woodpecker admin access)
  • namespaces — K8s namespaces to create and grant admin access to
  • domains — subdomains under viktorbarzin.me for Cloudflare DNS records
  • quota — resource limits per namespace (defaults shown above)

3. Apply Stacks

vault login -method=oidc

cd stacks/vault && terragrunt apply --non-interactive
# Creates: namespace, Vault policy, identity entity, K8s deployer role

cd ../platform && terragrunt apply --non-interactive
# Creates: RBAC bindings, ResourceQuota, TLS secret, DNS records

cd ../woodpecker && terragrunt apply --non-interactive
# Adds user to Woodpecker admin list

What Gets Auto-Generated

Resource Stack
Kubernetes namespace vault
Vault policy (namespace-owner-{user}) vault
Vault identity entity + OIDC alias vault
K8s deployer Role + Vault K8s role vault
RBAC RoleBinding (namespace admin) platform
RBAC ClusterRoleBinding (cluster read-only) platform
ResourceQuota platform
TLS secret in namespace platform
Cloudflare DNS records platform
Woodpecker admin access woodpecker

New User Onboarding

If you've been added as a namespace-owner, follow these steps to get started.

1. Join the VPN

# Install Tailscale: https://tailscale.com/download
tailscale login --login-server https://headscale.viktorbarzin.me
# Send the registration URL to Viktor, wait for approval
ping 10.0.20.100  # verify connectivity

2. Install Tools

Run the setup script to install kubectl, kubelogin, Vault CLI, Terraform, and Terragrunt:

# macOS
bash <(curl -fsSL https://k8s-portal.viktorbarzin.me/setup/script?os=mac)

# Linux
bash <(curl -fsSL https://k8s-portal.viktorbarzin.me/setup/script?os=linux)

3. Authenticate

# Log into Vault (opens browser for SSO)
vault login -method=oidc

# Test kubectl (opens browser for OIDC login)
kubectl get pods -n YOUR_NAMESPACE

4. Deploy Your First App

# Clone the infra repo
git clone https://github.com/ViktorBarzin/infra.git && cd infra

# Copy the stack template
cp -r stacks/_template stacks/myapp
mv stacks/myapp/main.tf.example stacks/myapp/main.tf

# Edit main.tf — replace all <placeholders>

# Store secrets in Vault
vault kv put secret/YOUR_USERNAME/myapp DB_PASSWORD=secret123

# Submit a PR
git checkout -b feat/myapp
git add stacks/myapp/
git commit -m "add myapp stack"
git push -u origin feat/myapp

After review and merge, an admin runs cd stacks/myapp && terragrunt apply.

5. Set Up CI/CD (Optional)

Create .woodpecker.yml in your app's Forgejo repo:

steps:
  - name: build
    image: woodpeckerci/plugin-docker-buildx
    settings:
      repo: YOUR_DOCKERHUB_USER/myapp
      tag: ["${CI_PIPELINE_NUMBER}", "latest"]
      username:
        from_secret: dockerhub-username
      password:
        from_secret: dockerhub-token
      platforms: linux/amd64

  - name: deploy
    image: hashicorp/vault:1.18.1
    commands:
      - export VAULT_ADDR=http://vault-active.vault.svc.cluster.local:8200
      - export VAULT_TOKEN=$(vault write -field=token auth/kubernetes/login
          role=ci jwt=$(cat /var/run/secrets/kubernetes.io/serviceaccount/token))
      - KUBE_TOKEN=$(vault write -field=service_account_token
          kubernetes/creds/YOUR_NAMESPACE-deployer
          kubernetes_namespace=YOUR_NAMESPACE)
      - kubectl --server=https://kubernetes.default.svc
          --token=$KUBE_TOKEN
          --certificate-authority=/var/run/secrets/kubernetes.io/serviceaccount/ca.crt
          -n YOUR_NAMESPACE set image deployment/myapp
          myapp=YOUR_DOCKERHUB_USER/myapp:${CI_PIPELINE_NUMBER}

Useful Commands

# Check your pods
kubectl get pods -n YOUR_NAMESPACE

# View quota usage
kubectl describe resourcequota -n YOUR_NAMESPACE

# Store/read secrets
vault kv put secret/YOUR_USERNAME/myapp KEY=value
vault kv get secret/YOUR_USERNAME/myapp

# Get a short-lived K8s deploy token
vault write kubernetes/creds/YOUR_NAMESPACE-deployer \
  kubernetes_namespace=YOUR_NAMESPACE

Important Rules

  • All changes go through Terraform — never kubectl apply/edit/patch directly
  • Never put secrets in code — use Vault: vault kv put secret/YOUR_USERNAME/...
  • Always use a PR — never push directly to master
  • Docker images: build for linux/amd64, use versioned tags (not :latest)

git-crypt setup

To decrypt the secrets, you need to setup git-crypt.

  1. Install git-crypt.
  2. Setup gpg keys on the machine
  3. git-crypt unlock

This will unlock the secrets and will lock them on commit